We are Oak Bioinformatics.

Dedicated to high-quality bioinformatics products

Ryangguk Kim, PhD

CEO

Ryangguk Kim obtained BS, MS, and PhD in biological sciences and biotechnology at the Seoul National University. He went through post-doctoral training in bioinformatics and computational biology at The Georgia Institute of Technology, The University at Buffalo, and The University of North Carolina at Charlotte. Before founding Oak Bioinformatics, LLC, Ryangguk worked as a bioinformatics scientist at In Silico Solutions, LLC and Kiromic Biopharma, Inc. for 11 years.

Our technologies

Web

Full-stack web server development with front-end and back-end frameworks

Cloud

Amazon Web Services, Microsoft Azure, and Google Cloud Platform

Big data

Apache Spark, Dask, Pandas, Hadoop, and other leading tools

Containerization

Proficiency with leading containerization technology including Docker and Kubernetes

NGS

Processing, analysis, and handling of next-generation sequencing data

Cluster computing

Established technologies for cluster computing including PBS and Slurm

Database

Major database architectures including MySQL, PostgreSQL, SQLite, and Google Big Query

Language

Python, Java, Javascript, R, C, C++, Rust, Matlab, and other performant programming languages

Simulation

Molecular simulation methods including protein-ligand (drug) docking and protein folding

Visualization

DNA, RNA, and protein visualization on GUI and browser

Version control

Best practices for leading version control systems including Git and GitHub

Science

Deep knowledge on biological sciences including genomics, bioinformatics, and molecular biology